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Ah, FTP, those were the days. That's why server-based code is so popular, it's such a hassle dealing with keeping file structures synced up, manually. A friggin' pain in the posterior. But you can't always go with a CMS or web application, so your best bet is either just use Windows itself, any modern version since this century, and drag-n-drop your entire web site onto the server. Say yes-to-all about overriding files that already exist up there. It's slow, but when it finishes you can be 100 % sure your server has exactly what you have. Forrest's software is really cool, too, and I've got a personal site I use it on, but there's something to be said for not using extra software when you don't need to.
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