I was wondering if there was a way with javascript or something that i could select multiple files with like Ctrl + A so i dont have to individually select each one of the files. If so can i do it with a regular:

<input type="file" name="upload" id="upload">

I have seen it with a script like SWF Upload but it does not use the input form

I've saw this done with Java, the best thing for you is use a FTP to move lots of files.

If you have cpanel though, upload a zip and unzip it server side