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If you use server side code to write the uploader it doesn't need to use FTP at all, then your real world app can simply communicate with the uploader. (A thin client application). Or you can encrypt/decrypt the password within the app so it is never in plain text in the application therefore accessible using a hex reader.
Other than that, get your host to set the target folder to have "write" permissions, or set it yourself if you have sufficient access.
For *nix + Apache it can be done via FTP using "chmod 777"
For IIS it needs to be done a server level so you need a site control panel or have direct/terminal services access
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